BayesX - Software for Bayesian Inference in Structured Additive Regression Models Version 2.0.1 (21.10.2009) > dataset zambia > zambia.infile using T:MATHS/DMA0JE/zambia.raw NOTE: 9 variables with 4847 observations read from file T:MATHS/DMA0JE/zambia.raw > zambia.describe > zambia.descriptive bmi Variable Obs Mean Median Std Min Max bmi 4847 21.944349 21.4 3.2879659 12.8 39.29 > zambia.descriptive tpr Variable Obs Mean Median Std Min Max tpr 4847 -0.13265938 -1 0.99126395 -1 1 > b.regress hazstd =agc, family=gaussian using zambia ERROR: object b is not existing > bayesreg b > b.regress hazstd =agc, family=gaussian using zambia BAYESREG OBJECT b: regression procedure GENERAL OPTIONS: Number of iterations: 52000 Burn-in period: 2000 Thinning parameter: 50 RESPONSE DISTRIBUTION: Family: Gaussian Number of observations: 4847 Number of observations with positive weights: 4847 Response function: identity Hyperparameter a: 0.001 Hyperparameter b: 0.001 OPTIONS FOR ESTIMATION: OPTIONS FOR FIXED EFFECTS: Priors: diffuse priors MCMC SIMULATION STARTED Computing starting values (may take some time) ITERATION: 1 APPROXIMATE RUN TIME: 17 seconds ITERATION: 1000 ITERATION: 2000 ITERATION: 3000 ITERATION: 4000 ITERATION: 5000 ITERATION: 6000 ITERATION: 7000 ITERATION: 8000 ITERATION: 9000 ITERATION: 10000 ITERATION: 11000 ITERATION: 12000 ITERATION: 13000 ITERATION: 14000 ITERATION: 15000 ITERATION: 16000 ITERATION: 17000 ITERATION: 18000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.00857936 Variance: 1.79769e+308 Minimum: 0.181185 Maximum: 0.180183 ITERATION: 19000 ITERATION: 20000 ITERATION: 21000 ITERATION: 22000 ITERATION: 23000 ITERATION: 24000 ITERATION: 25000 ITERATION: 26000 ITERATION: 27000 ITERATION: 28000 ITERATION: 29000 ITERATION: 30000 ITERATION: 31000 ITERATION: 32000 ITERATION: 33000 ITERATION: 34000 ITERATION: 35000 FixedEffects1 Acceptance rate: 100 % Relative Changes in Mean: 0.000647655 Variance: 0.0102465 Minimum: 0.0443115 Maximum: 0.0433157 ITERATION: 36000 ITERATION: 37000 ITERATION: 38000 ITERATION: 39000 ITERATION: 40000 ITERATION: 41000 ITERATION: 42000 ITERATION: 43000 ITERATION: 44000 ITERATION: 45000 ITERATION: 46000 ITERATION: 47000 ITERATION: 48000 ITERATION: 49000 ITERATION: 50000 ITERATION: 51000 FixedEffects1 Acceptance rate: 100 % Relative Changes in Mean: 0.000930839 Variance: 0.0316421 Minimum: 0.0297185 Maximum: 0.00103046 ITERATION: 52000 FixedEffects1 Acceptance rate: 100 % SIMULATION TERMINATED SIMULATION RUN TIME: 17 seconds ESTIMATION RESULTS: Estimation results for the scale parameter: Acceptance rate: 100 % Mean: 0.937409 Std. dev.: 0.019449 2.5% Quantile: 0.90065 10% Quantile: 0.912635 50% Quantile: 0.93619 90% Quantile: 0.961802 97.5% Quantile: 0.97794 FixedEffects1 Acceptance rate: 100 % Variable mean Std. Dev. 2.5% quant. median 97.5% quant. const 0.391966 0.02572 0.344378 0.392128 0.440482 agc -0.0147074 0.000794864 -0.0162643 -0.0147259 -0.0131919 Results for fixed effects are also stored in file C:\temp\bayesx\output\b_FixedEffects1.res Files of model summary: --------------------------------------------------------------------------- Latex file of model summaries is stored in file C:\temp\bayesx\output\b_model_summary.tex --------------------------------------------------------------------------- > b.regress hazstd =agc, family=gaussian iterations =12000 step=10 using zambia BAYESREG OBJECT b: regression procedure GENERAL OPTIONS: Number of iterations: 12000 Burn-in period: 2000 Thinning parameter: 10 RESPONSE DISTRIBUTION: Family: Gaussian Number of observations: 4847 Number of observations with positive weights: 4847 Response function: identity Hyperparameter a: 0.001 Hyperparameter b: 0.001 OPTIONS FOR ESTIMATION: OPTIONS FOR FIXED EFFECTS: Priors: diffuse priors MCMC SIMULATION STARTED Computing starting values (may take some time) ITERATION: 1 APPROXIMATE RUN TIME: 3 seconds ITERATION: 1000 ITERATION: 2000 ITERATION: 3000 ITERATION: 4000 ITERATION: 5000 FixedEffects1 Acceptance rate: 99.98 % Relative Changes in Mean: 0.0718537 Variance: 1.79769e+308 Minimum: 0.249603 Maximum: 0.131794 ITERATION: 6000 ITERATION: 7000 ITERATION: 8000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.000983063 Variance: 0.0664458 Minimum: 0.0181158 Maximum: 0.000368533 ITERATION: 9000 ITERATION: 10000 ITERATION: 11000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.000770631 Variance: 0.0650198 Minimum: 0 Maximum: 0 ITERATION: 12000 FixedEffects1 Acceptance rate: 99.99 % SIMULATION TERMINATED SIMULATION RUN TIME: 4 seconds ESTIMATION RESULTS: Estimation results for the scale parameter: Acceptance rate: 100 % Mean: 0.937816 Std. dev.: 0.0197451 2.5% Quantile: 0.898103 10% Quantile: 0.913133 50% Quantile: 0.937898 90% Quantile: 0.963016 97.5% Quantile: 0.97772 FixedEffects1 Acceptance rate: 100 % Variable mean Std. Dev. 2.5% quant. median 97.5% quant. const 0.392172 0.0253777 0.341467 0.39127 0.440514 agc -0.014697 0.000821852 -0.0163326 -0.0146891 -0.013001 Results for fixed effects are also stored in file C:\temp\bayesx\output\b_FixedEffects1.res Files of model summary: --------------------------------------------------------------------------- Latex file of model summaries is stored in file C:\temp\bayesx\output\b_model_summary.tex --------------------------------------------------------------------------- > b.regress hazstd =agc +bmi+sex+rcw +tpr, family=gaussian iterations =12000 step=10 using zambia BAYESREG OBJECT b: regression procedure GENERAL OPTIONS: Number of iterations: 12000 Burn-in period: 2000 Thinning parameter: 10 RESPONSE DISTRIBUTION: Family: Gaussian Number of observations: 4847 Number of observations with positive weights: 4847 Response function: identity Hyperparameter a: 0.001 Hyperparameter b: 0.001 OPTIONS FOR ESTIMATION: OPTIONS FOR FIXED EFFECTS: Priors: diffuse priors MCMC SIMULATION STARTED Computing starting values (may take some time) ITERATION: 1 APPROXIMATE RUN TIME: 7 seconds ITERATION: 1000 ITERATION: 2000 ITERATION: 3000 ITERATION: 4000 ITERATION: 5000 FixedEffects1 Acceptance rate: 99.98 % Relative Changes in Mean: 0.367919 Variance: 1.79769e+308 Minimum: 0.50964 Maximum: 1.18591 ITERATION: 6000 ITERATION: 7000 ITERATION: 8000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.00815501 Variance: 0.0932515 Minimum: 0.0643972 Maximum: 0.0835704 ITERATION: 9000 ITERATION: 10000 ITERATION: 11000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.0136492 Variance: 0.0204416 Minimum: 0.00489587 Maximum: 0.497535 ITERATION: 12000 FixedEffects1 Acceptance rate: 99.99 % SIMULATION TERMINATED SIMULATION RUN TIME: 7 seconds ESTIMATION RESULTS: Estimation results for the scale parameter: Acceptance rate: 100 % Mean: 0.897775 Std. dev.: 0.0179982 2.5% Quantile: 0.864452 10% Quantile: 0.874651 50% Quantile: 0.897821 90% Quantile: 0.92134 97.5% Quantile: 0.933759 FixedEffects1 Acceptance rate: 100 % Variable mean Std. Dev. 2.5% quant. median 97.5% quant. const -0.169197 0.0979193 -0.368072 -0.169742 0.0201862 agc -0.0150958 0.000791547 -0.0166155 -0.0150731 -0.0135508 bmi 0.0269092 0.00432876 0.0187418 0.0269602 0.035595 sex -0.0529861 0.0136352 -0.0810603 -0.0519631 -0.0264738 rcw 0.00375091 0.0135611 -0.0229095 0.00361905 0.0306338 tpr 0.148007 0.0142291 0.120981 0.148044 0.174878 Results for fixed effects are also stored in file C:\temp\bayesx\output\b_FixedEffects1.res Files of model summary: --------------------------------------------------------------------------- Latex file of model summaries is stored in file C:\temp\bayesx\output\b_model_summary.tex --------------------------------------------------------------------------- > b.regress hazstd =agc(psplinerw2) +bmi(psplinerw2)+sex+rcw +tpr, family=gaussian iterations =12000 step=10 using zambia BAYESREG OBJECT b: regression procedure GENERAL OPTIONS: Number of iterations: 12000 Burn-in period: 2000 Thinning parameter: 10 RESPONSE DISTRIBUTION: Family: Gaussian Number of observations: 4847 Number of observations with positive weights: 4847 Response function: identity Hyperparameter a: 0.001 Hyperparameter b: 0.001 OPTIONS FOR ESTIMATION: OPTIONS FOR FIXED EFFECTS: Priors: diffuse priors OPTIONS FOR P-SPLINE TERM: f_agc_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR P-SPLINE TERM: f_bmi_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 MCMC SIMULATION STARTED Computing starting values (may take some time) ITERATION: 1 APPROXIMATE RUN TIME: 21 seconds ITERATION: 1000 ITERATION: 2000 ITERATION: 3000 ITERATION: 4000 ITERATION: 5000 FixedEffects1 Acceptance rate: 99.98 % Relative Changes in Mean: 0.440345 Variance: 1.79769e+308 Minimum: 1.14282 Maximum: 0.32732 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.184862 Variance: 1.79769e+308 Minimum: 0.485207 Maximum: 0.330361 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.597529 Variance: 1.79769e+308 Minimum: 0.953316 Maximum: 1.01655 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.690525 Variance: 1.79769e+308 Minimum: 2.47726 Maximum: 2.92936 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 3.06307 Variance: 1.79769e+308 Minimum: 0.709339 Maximum: 57.3858 ITERATION: 6000 ITERATION: 7000 ITERATION: 8000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.00945254 Variance: 0.00808126 Minimum: 0.0615748 Maximum: 0.0323675 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.00476029 Variance: 0.104702 Minimum: 0.210887 Maximum: 0.124046 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0710695 Variance: 0.334666 Minimum: 0 Maximum: 0.72406 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0180054 Variance: 0.100771 Minimum: 0.0373062 Maximum: 0.175426 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0852882 Variance: 0.125456 Minimum: 0 Maximum: 0 ITERATION: 9000 ITERATION: 10000 ITERATION: 11000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.00942184 Variance: 0.0202161 Minimum: 0.032074 Maximum: 0.00780964 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.00441905 Variance: 0.0289522 Minimum: 0.0329355 Maximum: 0.0307276 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0109383 Variance: 0.0561063 Minimum: 0.377189 Maximum: 0.325108 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0148969 Variance: 0.0278877 Minimum: 0.0745478 Maximum: 0.012313 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0490967 Variance: 0.20601 Minimum: 0.097449 Maximum: 0.148065 ITERATION: 12000 FixedEffects1 Acceptance rate: 99.99 % SIMULATION TERMINATED SIMULATION RUN TIME: 22 seconds ESTIMATION RESULTS: Estimation results for the scale parameter: Acceptance rate: 100 % Mean: 0.842189 Std. dev.: 0.0169883 2.5% Quantile: 0.810066 10% Quantile: 0.820748 50% Quantile: 0.841693 90% Quantile: 0.864476 97.5% Quantile: 0.877504 FixedEffects1 Acceptance rate: 100 % Variable mean Std. Dev. 2.5% quant. median 97.5% quant. const 0.0493028 0.0404796 -0.0330468 0.0495401 0.13316 sex -0.0519597 0.0127829 -0.0781301 -0.0519965 -0.0274598 rcw 0.00251369 0.0134253 -0.0250119 0.00272255 0.0288266 tpr 0.143285 0.0138692 0.117298 0.14322 0.170837 Results for fixed effects are also stored in file C:\temp\bayesx\output\b_FixedEffects1.res f_agc_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\b_f_agc_pspline.res Postscript file is stored in file C:\temp\bayesx\output\b_f_agc_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 1 f_agc_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00675576 Std. dev.: 0.00679774 2.5% Quantile: 0.00112827 10% Quantile: 0.00172902 50% Quantile: 0.00448157 90% Quantile: 0.013731 97.5% Quantile: 0.0241507 Results for the variance component are also stored in file C:\temp\bayesx\output\b_f_agc_pspline_var.res Estimation results for the smoothing parameter: Mean: 234.535 (df: 6.28971) Std. dev.: 189.291 2.5% Quantile: 34.9683 (df: 9.37233) 10% Quantile: 61.6895 (df: 8.36122) 50% Quantile: 187.883 (df: 6.60357) 90% Quantile: 481.188 (df: 5.35394) 97.5% Quantile: 739.644 (df: 4.85192) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\b_f_agc_pspline_lambda.res f_bmi_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\b_f_bmi_pspline.res Postscript file is stored in file C:\temp\bayesx\output\b_f_bmi_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 3 f_bmi_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.002193 Std. dev.: 0.003397 2.5% Quantile: 0.000261186 10% Quantile: 0.000438323 50% Quantile: 0.00122705 90% Quantile: 0.00433513 97.5% Quantile: 0.0112835 Results for the variance component are also stored in file C:\temp\bayesx\output\b_f_bmi_pspline_var.res Estimation results for the smoothing parameter: Mean: 918.98 (df: 3.36979) Std. dev.: 805.63 2.5% Quantile: 75.1147 (df: 6.17291) 10% Quantile: 193.784 (df: 4.95651) 50% Quantile: 684.874 (df: 3.63239) 90% Quantile: 1934.2 (df: 2.77562) 97.5% Quantile: 3229.19 (df: 2.42127) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\b_f_bmi_pspline_lambda.res Files of model summary: --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions is stored in file C:\temp\bayesx\output\b_graphics.prg --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions in R is stored in file C:\temp\bayesx\output\b_r.R --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions in Stata is stored in file C:\temp\bayesx\output\b_stata.do --------------------------------------------------------------------------- Latex file of model summaries is stored in file C:\temp\bayesx\output\b_model_summary.tex --------------------------------------------------------------------------- > b.plotnonp 1 > b.plotnonp 3 > map m > m.infile using T:/MATHS/DMA0JE/zambia.bnd NOTE: 57 regions read from file T:/MATHS/DMA0JE/zambia.bnd > m.reorder NOTE: bandsize changed from 14 to 11 > bayesreg c > c.regress hazstd =agc(psplinerw2) +bmi(psplinerw2)+sex+rcw +tpr +district(spatial, map=m), family=gaussian iterations =12000 step=10 using zambia NOTE: no observations for region 11 NOTE: no observations for region 84 NOTE: no observations for region 96 BAYESREG OBJECT c: regression procedure GENERAL OPTIONS: Number of iterations: 12000 Burn-in period: 2000 Thinning parameter: 10 RESPONSE DISTRIBUTION: Family: Gaussian Number of observations: 4847 Number of observations with positive weights: 4847 Response function: identity Hyperparameter a: 0.001 Hyperparameter b: 0.001 OPTIONS FOR ESTIMATION: OPTIONS FOR FIXED EFFECTS: Priors: diffuse priors OPTIONS FOR P-SPLINE TERM: f_agc_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR P-SPLINE TERM: f_bmi_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR NONPARAMETRIC TERM: f_district_spatial Prior: spatial Markov random field Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 MCMC SIMULATION STARTED Computing starting values (may take some time) ITERATION: 1 APPROXIMATE RUN TIME: 23 seconds ITERATION: 1000 ITERATION: 2000 ITERATION: 3000 ITERATION: 4000 ITERATION: 5000 FixedEffects1 Acceptance rate: 99.98 % Relative Changes in Mean: 0.290692 Variance: 1.79769e+308 Minimum: 1.49511 Maximum: 1.56531 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.163328 Variance: 1.79769e+308 Minimum: 0.511495 Maximum: 0.333743 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.497885 Variance: 1.79769e+308 Minimum: 0.925921 Maximum: 3.23214 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.37262 Variance: 1.79769e+308 Minimum: 1.43873 Maximum: 2.01869 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 2.89367 Variance: 1.79769e+308 Minimum: 0.691221 Maximum: 45.0537 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.376629 Variance: 1.79769e+308 Minimum: 1.38139 Maximum: 1.37476 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.388903 Variance: 1.79769e+308 Minimum: 0.64545 Maximum: 2.20919 ITERATION: 6000 ITERATION: 7000 ITERATION: 8000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.0213796 Variance: 0.0579236 Minimum: 0.0753873 Maximum: 0.0234314 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0033663 Variance: 0.0521161 Minimum: 0.101884 Maximum: 0.029797 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0307772 Variance: 0.0909334 Minimum: 0.179159 Maximum: 0 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0608492 Variance: 0.164072 Minimum: 0.813389 Maximum: 0.194617 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.223617 Variance: 4.64888 Minimum: 0.120775 Maximum: 4.39807 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.0157108 Variance: 0.0732057 Minimum: 0.112373 Maximum: 0.0936798 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0244603 Variance: 0.0333186 Minimum: 0.263306 Maximum: 0.0570275 ITERATION: 9000 ITERATION: 10000 ITERATION: 11000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.00707195 Variance: 0.0078376 Minimum: 0.242914 Maximum: 0.179167 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.00196488 Variance: 0.0489287 Minimum: 0.057018 Maximum: 0.036689 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0075451 Variance: 0.128255 Minimum: 0.178351 Maximum: 0.899754 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0154198 Variance: 0.0293784 Minimum: 0.0350933 Maximum: 0.0555917 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0137831 Variance: 0.25398 Minimum: 0 Maximum: 0 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.00912175 Variance: 0.0268946 Minimum: 0.0713105 Maximum: 0.0883221 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.00350082 Variance: 0.0540333 Minimum: 0 Maximum: 0.211342 ITERATION: 12000 FixedEffects1 Acceptance rate: 99.99 % SIMULATION TERMINATED SIMULATION RUN TIME: 24 seconds ESTIMATION RESULTS: Estimation results for the scale parameter: Acceptance rate: 100 % Mean: 0.809159 Std. dev.: 0.0165745 2.5% Quantile: 0.776394 10% Quantile: 0.788932 50% Quantile: 0.809233 90% Quantile: 0.830872 97.5% Quantile: 0.842333 FixedEffects1 Acceptance rate: 100 % Variable mean Std. Dev. 2.5% quant. median 97.5% quant. const -0.00280938 0.044458 -0.0902949 -0.0032509 0.0849942 sex -0.0572041 0.0135482 -0.0820955 -0.0579392 -0.0302356 rcw 0.0187376 0.0137461 -0.00851441 0.0182106 0.0462172 tpr 0.112404 0.0222312 0.0686459 0.112804 0.15534 Results for fixed effects are also stored in file C:\temp\bayesx\output\c_FixedEffects1.res f_agc_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_agc_pspline.res Postscript file is stored in file C:\temp\bayesx\output\c_f_agc_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 1 f_agc_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00674439 Std. dev.: 0.00715426 2.5% Quantile: 0.00120376 10% Quantile: 0.00181652 50% Quantile: 0.00445823 90% Quantile: 0.0141004 97.5% Quantile: 0.0265727 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_agc_pspline_var.res Estimation results for the smoothing parameter: Mean: 222.09 (df: 6.36576) Std. dev.: 168.306 2.5% Quantile: 30.9906 (df: 9.59707) 10% Quantile: 57.0912 (df: 8.49469) 50% Quantile: 180.457 (df: 6.66193) 90% Quantile: 447.169 (df: 5.44381) 97.5% Quantile: 673.891 (df: 4.95707) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_agc_pspline_lambda.res f_bmi_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_bmi_pspline.res Postscript file is stored in file C:\temp\bayesx\output\c_f_bmi_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 3 f_bmi_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00228138 Std. dev.: 0.00542282 2.5% Quantile: 0.000299751 10% Quantile: 0.000435405 50% Quantile: 0.00118826 90% Quantile: 0.00444736 97.5% Quantile: 0.00984288 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_bmi_pspline_var.res Estimation results for the smoothing parameter: Mean: 894.859 (df: 3.39287) Std. dev.: 758.428 2.5% Quantile: 81.9969 (df: 6.05222) 10% Quantile: 183.876 (df: 5.01879) 50% Quantile: 682.901 (df: 3.63505) 90% Quantile: 1852.81 (df: 2.80732) 97.5% Quantile: 2695.11 (df: 2.54139) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_bmi_pspline_lambda.res f_district_spatial Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_district_spatial.res Postscript file is stored in file C:\temp\bayesx\output\c_f_district_spatial.ps Results may be visualized in BayesX using method 'drawmap' Type for example: objectname.drawmap 5 f_district_spatial_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.0615134 Std. dev.: 0.0237641 2.5% Quantile: 0.0272115 10% Quantile: 0.0341105 50% Quantile: 0.0579585 90% Quantile: 0.0920555 97.5% Quantile: 0.116953 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_district_spatial_var.res Estimation results for the smoothing parameter: Mean: 15.2578 (df: 0) Std. dev.: 6.45205 2.5% Quantile: 6.7412 (df: 0) 10% Quantile: 8.7296 (df: 0) 50% Quantile: 13.9436 (df: 0) 90% Quantile: 23.6397 (df: 0) 97.5% Quantile: 29.9781 (df: 0) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_district_spatial_lambda.res Files of model summary: --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions is stored in file C:\temp\bayesx\output\c_graphics.prg NOTE: 'input filename' must be substituted by the filename of the boundary-file --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions in R is stored in file C:\temp\bayesx\output\c_r.R --------------------------------------------------------------------------- Latex file of model summaries is stored in file C:\temp\bayesx\output\c_model_summary.tex --------------------------------------------------------------------------- > c.drawmap 5 > c.regress hazstd =agc(psplinerw2) +bmi(psplinerw2)+sex+rcw +tpr +district(spatial, map=m)+district(random), family=gaussian iterations =12000 step=10 using zambia NOTE: no observations for region 11 NOTE: no observations for region 84 NOTE: no observations for region 96 BAYESREG OBJECT c: regression procedure GENERAL OPTIONS: Number of iterations: 12000 Burn-in period: 2000 Thinning parameter: 10 RESPONSE DISTRIBUTION: Family: Gaussian Number of observations: 4847 Number of observations with positive weights: 4847 Response function: identity Hyperparameter a: 0.001 Hyperparameter b: 0.001 OPTIONS FOR ESTIMATION: OPTIONS FOR FIXED EFFECTS: Priors: diffuse priors OPTIONS FOR P-SPLINE TERM: f_agc_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR P-SPLINE TERM: f_bmi_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR NONPARAMETRIC TERM: f_district_spatial Prior: spatial Markov random field Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR RANDOM EFFECT: f_district_random Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 MCMC SIMULATION STARTED Computing starting values (may take some time) ITERATION: 1 APPROXIMATE RUN TIME: 24 seconds ITERATION: 1000 ITERATION: 2000 ITERATION: 3000 ITERATION: 4000 ITERATION: 5000 FixedEffects1 Acceptance rate: 99.98 % Relative Changes in Mean: 0.163696 Variance: 1.79769e+308 Minimum: 1.17778 Maximum: 1.09711 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.146468 Variance: 1.79769e+308 Minimum: 0.488598 Maximum: 0.388759 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.134646 Variance: 1.79769e+308 Minimum: 0.939628 Maximum: 18.9336 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.60655 Variance: 1.79769e+308 Minimum: 2.89203 Maximum: 3.33446 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.730531 Variance: 1.79769e+308 Minimum: 0.844542 Maximum: 25.2401 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.44483 Variance: 1.79769e+308 Minimum: 1.37912 Maximum: 1.45102 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.103714 Variance: 1.79769e+308 Minimum: 0.821083 Maximum: 3.59277 f_district_random Acceptance rate: 100 % Relative Changes in Mean: 0.951287 Variance: 1.79769e+308 Minimum: 3.70851 Maximum: 4.33404 f_district_random_variance Acceptance rate: 100 % Relative Changes in Mean: 1.2369 Variance: 1.79769e+308 Minimum: 0.904235 Maximum: 8.19135 ITERATION: 6000 ITERATION: 7000 ITERATION: 8000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.0177714 Variance: 0.0122314 Minimum: 0.0536767 Maximum: 0.189007 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.00326079 Variance: 0.0859228 Minimum: 0.0513877 Maximum: 0.0253935 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.078189 Variance: 0.411949 Minimum: 0 Maximum: 0 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0174038 Variance: 0.13421 Minimum: 0.205054 Maximum: 0.359486 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0177924 Variance: 0.140516 Minimum: 0 Maximum: 0 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.0202563 Variance: 0.0450215 Minimum: 0.152231 Maximum: 0.103118 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.00354454 Variance: 0.0392271 Minimum: 0 Maximum: 0 f_district_random Acceptance rate: 100 % Relative Changes in Mean: 0.0685687 Variance: 0.0647202 Minimum: 0.147517 Maximum: 0.152483 f_district_random_variance Acceptance rate: 100 % Relative Changes in Mean: 0.00808263 Variance: 0.111225 Minimum: 0 Maximum: 0 ITERATION: 9000 ITERATION: 10000 ITERATION: 11000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.0120798 Variance: 0.0171995 Minimum: 0.0418621 Maximum: 0.0121221 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.00259307 Variance: 0.0526957 Minimum: 0.0182002 Maximum: 0.100468 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0203535 Variance: 0.154514 Minimum: 0 Maximum: 0 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0149039 Variance: 0.0434481 Minimum: 0.312846 Maximum: 0.0044921 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0881565 Variance: 0.574649 Minimum: 0 Maximum: 1.02728 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.0123359 Variance: 0.0243269 Minimum: 0.0780178 Maximum: 0.0726034 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.00486815 Variance: 0.00071715 Minimum: 0 Maximum: 0 f_district_random Acceptance rate: 100 % Relative Changes in Mean: 0.0419301 Variance: 0.0379516 Minimum: 0.108835 Maximum: 0.0943047 f_district_random_variance Acceptance rate: 100 % Relative Changes in Mean: 0.00643929 Variance: 0.0344064 Minimum: 0.212123 Maximum: 0.152761 ITERATION: 12000 FixedEffects1 Acceptance rate: 99.99 % SIMULATION TERMINATED SIMULATION RUN TIME: 28 seconds ESTIMATION RESULTS: Estimation results for the scale parameter: Acceptance rate: 100 % Mean: 0.807563 Std. dev.: 0.016165 2.5% Quantile: 0.777546 10% Quantile: 0.78687 50% Quantile: 0.807609 90% Quantile: 0.828167 97.5% Quantile: 0.840706 FixedEffects1 Acceptance rate: 100 % Variable mean Std. Dev. 2.5% quant. median 97.5% quant. const -0.00753281 0.0455476 -0.0962422 -0.00611101 0.0771411 sex -0.0565247 0.0129936 -0.0816348 -0.0567794 -0.0313374 rcw 0.0188571 0.0134745 -0.00726355 0.018751 0.0460635 tpr 0.116084 0.0216285 0.0758084 0.116796 0.158501 Results for fixed effects are also stored in file C:\temp\bayesx\output\c_FixedEffects1.res f_agc_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_agc_pspline.res Postscript file is stored in file C:\temp\bayesx\output\c_f_agc_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 1 f_agc_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00650319 Std. dev.: 0.00897381 2.5% Quantile: 0.00120776 10% Quantile: 0.00187335 50% Quantile: 0.00431219 90% Quantile: 0.0120798 97.5% Quantile: 0.025656 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_agc_pspline_var.res Estimation results for the smoothing parameter: Mean: 228.558 (df: 6.32562) Std. dev.: 168.564 2.5% Quantile: 32.4755 (df: 9.50957) 10% Quantile: 66.4831 (df: 8.23365) 50% Quantile: 186.239 (df: 6.61625) 90% Quantile: 431.523 (df: 5.48791) 97.5% Quantile: 667.039 (df: 4.96873) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_agc_pspline_lambda.res f_bmi_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_bmi_pspline.res Postscript file is stored in file C:\temp\bayesx\output\c_f_bmi_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 3 f_bmi_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00191232 Std. dev.: 0.00285896 2.5% Quantile: 0.000276049 10% Quantile: 0.00041749 50% Quantile: 0.0011441 90% Quantile: 0.00392945 97.5% Quantile: 0.00824755 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_bmi_pspline_var.res Estimation results for the smoothing parameter: Mean: 926.502 (df: 3.36274) Std. dev.: 760.966 2.5% Quantile: 97.8796 (df: 5.81353) 10% Quantile: 206.184 (df: 4.88368) 50% Quantile: 699.149 (df: 3.61343) 90% Quantile: 1938.1 (df: 2.77414) 97.5% Quantile: 2896.53 (df: 2.49288) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_bmi_pspline_lambda.res f_district_spatial Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_district_spatial.res Postscript file is stored in file C:\temp\bayesx\output\c_f_district_spatial.ps Results may be visualized in BayesX using method 'drawmap' Type for example: objectname.drawmap 5 f_district_spatial_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.0408213 Std. dev.: 0.0207905 2.5% Quantile: 0.012266 10% Quantile: 0.0174558 50% Quantile: 0.0373332 90% Quantile: 0.0677518 97.5% Quantile: 0.0877475 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_district_spatial_var.res Estimation results for the smoothing parameter: Mean: 26.0748 (df: 0) Std. dev.: 15.7854 2.5% Quantile: 9.12835 (df: 0) 10% Quantile: 11.9928 (df: 0) 50% Quantile: 21.768 (df: 0) 90% Quantile: 45.7593 (df: 0) 97.5% Quantile: 66.161 (df: 0) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_district_spatial_lambda.res f_district_random Acceptance rate: 100 % Results for random effects are stored in file C:\temp\bayesx\output\c_f_district_random.res Results for the sum of the structured and unstructured spatial effects are stored in file C:\temp\bayesx\output\c_district_spatialtotal.res f_district_random_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00840433 Std. dev.: 0.00648144 2.5% Quantile: 0.000708762 10% Quantile: 0.00153526 50% Quantile: 0.00706241 90% Quantile: 0.0172346 97.5% Quantile: 0.0243899 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_district_random_var.res Files of model summary: --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions is stored in file C:\temp\bayesx\output\c_graphics.prg NOTE: 'input filename' must be substituted by the filename of the boundary-file --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions in R is stored in file C:\temp\bayesx\output\c_r.R --------------------------------------------------------------------------- Latex file of model summaries is stored in file C:\temp\bayesx\output\c_model_summary.tex --------------------------------------------------------------------------- --------------------------------------------------------------------------- > c.regress hazstd =agc(psplinerw2) +bmi(psplinerw2)+sex+rcw +tpr +district(spatial, map=m)+district(random), family=gaussian iterations =12000 step=10 using zambia NOTE: no observations for region 11 NOTE: no observations for region 84 NOTE: no observations for region 96 BAYESREG OBJECT c: regression procedure GENERAL OPTIONS: Number of iterations: 12000 Burn-in period: 2000 Thinning parameter: 10 RESPONSE DISTRIBUTION: Family: Gaussian Number of observations: 4847 Number of observations with positive weights: 4847 Response function: identity Hyperparameter a: 0.001 Hyperparameter b: 0.001 OPTIONS FOR ESTIMATION: OPTIONS FOR FIXED EFFECTS: Priors: diffuse priors OPTIONS FOR P-SPLINE TERM: f_agc_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR P-SPLINE TERM: f_bmi_pspline Prior: second order random walk Number of knots: 20 Knot choice: equidistant Degree of Splines: 3 Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR NONPARAMETRIC TERM: f_district_spatial Prior: spatial Markov random field Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 OPTIONS FOR RANDOM EFFECT: f_district_random Hyperprior a for variance parameter: 0.001 Hyperprior b for variance parameter: 0.001 MCMC SIMULATION STARTED Computing starting values (may take some time) ITERATION: 1 APPROXIMATE RUN TIME: 26 seconds ITERATION: 1000 ITERATION: 2000 ITERATION: 3000 ITERATION: 4000 ITERATION: 5000 FixedEffects1 Acceptance rate: 99.98 % Relative Changes in Mean: 0.297653 Variance: 1.79769e+308 Minimum: 1.6575 Maximum: 1.37671 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.132187 Variance: 1.79769e+308 Minimum: 0.502244 Maximum: 0.432936 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.265731 Variance: 1.79769e+308 Minimum: 0.91359 Maximum: 4.27113 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.47811 Variance: 1.79769e+308 Minimum: 2.94778 Maximum: 2.47175 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.351294 Variance: 1.79769e+308 Minimum: 0.947628 Maximum: 5.85185 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.497297 Variance: 1.79769e+308 Minimum: 1.41436 Maximum: 1.63721 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0408797 Variance: 1.79769e+308 Minimum: 0.851015 Maximum: 2.30833 f_district_random Acceptance rate: 100 % Relative Changes in Mean: 0.872535 Variance: 1.79769e+308 Minimum: 2.67384 Maximum: 2.43476 f_district_random_variance Acceptance rate: 100 % Relative Changes in Mean: 0.332887 Variance: 1.79769e+308 Minimum: 0.952503 Maximum: 1.69548 ITERATION: 6000 ITERATION: 7000 ITERATION: 8000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.0168843 Variance: 0.130865 Minimum: 0.0303232 Maximum: 0.0596299 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.00501758 Variance: 0.054604 Minimum: 0.0517108 Maximum: 0.0382266 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0246687 Variance: 0.384778 Minimum: 0.00581514 Maximum: 0.654241 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.011712 Variance: 0.034471 Minimum: 0.399157 Maximum: 0.120255 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0604527 Variance: 0.0738482 Minimum: 0 Maximum: 0.151333 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.0246543 Variance: 0.0681498 Minimum: 0.0828502 Maximum: 0.098523 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.045889 Variance: 0.0610978 Minimum: 0 Maximum: 0 f_district_random Acceptance rate: 100 % Relative Changes in Mean: 0.128896 Variance: 0.10978 Minimum: 0.187077 Maximum: 0.189411 f_district_random_variance Acceptance rate: 100 % Relative Changes in Mean: 0.128101 Variance: 0.369733 Minimum: 0.694203 Maximum: 0.178113 ITERATION: 9000 ITERATION: 10000 ITERATION: 11000 FixedEffects1 Acceptance rate: 99.99 % Relative Changes in Mean: 0.0206271 Variance: 0.0282394 Minimum: 0.00097865 Maximum: 0.0878823 f_agc_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.00426755 Variance: 0.0282545 Minimum: 0.0499902 Maximum: 0.0258556 f_agc_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0223318 Variance: 0.0423552 Minimum: 0.0329769 Maximum: 0 f_bmi_pspline Acceptance rate: 100 % Relative Changes in Mean: 0.0184239 Variance: 0.0297844 Minimum: 0.0375659 Maximum: 0.194474 f_bmi_pspline_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0731641 Variance: 0.0525315 Minimum: 0 Maximum: 0 f_district_spatial Acceptance rate: 100 % Relative Changes in Mean: 0.0115544 Variance: 0.0244291 Minimum: 0.0980061 Maximum: 0.054337 f_district_spatial_variance Acceptance rate: 100 % Relative Changes in Mean: 0.00662943 Variance: 0.00435957 Minimum: 0 Maximum: 0.000551627 f_district_random Acceptance rate: 100 % Relative Changes in Mean: 0.0412467 Variance: 0.04168 Minimum: 0.0969482 Maximum: 0.102661 f_district_random_variance Acceptance rate: 100 % Relative Changes in Mean: 0.0116338 Variance: 0.0214956 Minimum: 0 Maximum: 0.0468743 ITERATION: 12000 FixedEffects1 Acceptance rate: 99.99 % SIMULATION TERMINATED SIMULATION RUN TIME: 28 seconds ESTIMATION RESULTS: Estimation results for the scale parameter: Acceptance rate: 100 % Mean: 0.808211 Std. dev.: 0.0160459 2.5% Quantile: 0.776035 10% Quantile: 0.788042 50% Quantile: 0.808367 90% Quantile: 0.827611 97.5% Quantile: 0.839299 FixedEffects1 Acceptance rate: 100 % Variable mean Std. Dev. 2.5% quant. median 97.5% quant. const -0.00921608 0.0456004 -0.103286 -0.00833902 0.0757494 sex -0.05656 0.0132941 -0.0833988 -0.0563201 -0.0320963 rcw 0.0200155 0.0142635 -0.00784324 0.0194315 0.0491659 tpr 0.115449 0.0221568 0.0724338 0.114813 0.15983 Results for fixed effects are also stored in file C:\temp\bayesx\output\c_FixedEffects1.res f_agc_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_agc_pspline.res Postscript file is stored in file C:\temp\bayesx\output\c_f_agc_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 1 f_agc_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00681639 Std. dev.: 0.00739706 2.5% Quantile: 0.00118845 10% Quantile: 0.00192168 50% Quantile: 0.00448252 90% Quantile: 0.0133856 97.5% Quantile: 0.0282203 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_agc_pspline_var.res Estimation results for the smoothing parameter: Mean: 218.177 (df: 6.39071) Std. dev.: 163.077 2.5% Quantile: 28.9086 (df: 9.72799) 10% Quantile: 60.5232 (df: 8.39397) 50% Quantile: 180.735 (df: 6.65969) 90% Quantile: 413.86 (df: 5.54005) 97.5% Quantile: 674.513 (df: 4.95602) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_agc_pspline_lambda.res f_bmi_pspline Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_bmi_pspline.res Postscript file is stored in file C:\temp\bayesx\output\c_f_bmi_pspline.ps Results may be visualized using method 'plotnonp' Type for example: objectname.plotnonp 3 f_bmi_pspline_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00192575 Std. dev.: 0.00215157 2.5% Quantile: 0.000278286 10% Quantile: 0.000427336 50% Quantile: 0.00121119 90% Quantile: 0.00418211 97.5% Quantile: 0.00803554 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_bmi_pspline_var.res Estimation results for the smoothing parameter: Mean: 881.844 (df: 3.40564) Std. dev.: 750.352 2.5% Quantile: 101.616 (df: 5.76391) 10% Quantile: 191.592 (df: 4.96997) 50% Quantile: 668.673 (df: 3.6545) 90% Quantile: 1895.23 (df: 2.79059) 97.5% Quantile: 2919.73 (df: 2.48756) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_bmi_pspline_lambda.res f_district_spatial Acceptance rate: 100 % Results are stored in file C:\temp\bayesx\output\c_f_district_spatial.res Postscript file is stored in file C:\temp\bayesx\output\c_f_district_spatial.ps Results may be visualized in BayesX using method 'drawmap' Type for example: objectname.drawmap 5 f_district_spatial_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.0392036 Std. dev.: 0.0204113 2.5% Quantile: 0.011806 10% Quantile: 0.0172106 50% Quantile: 0.034809 90% Quantile: 0.06621 97.5% Quantile: 0.0908058 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_district_spatial_var.res Estimation results for the smoothing parameter: Mean: 27.0561 (df: 0) Std. dev.: 15.7036 2.5% Quantile: 8.87699 (df: 0) 10% Quantile: 12.1332 (df: 0) 50% Quantile: 23.018 (df: 0) 90% Quantile: 46.7636 (df: 0) 97.5% Quantile: 68.4651 (df: 0) Results for the smoothing parameter are also stored in file C:\temp\bayesx\output\c_f_district_spatial_lambda.res f_district_random Acceptance rate: 100 % Results for random effects are stored in file C:\temp\bayesx\output\c_f_district_random.res Results for the sum of the structured and unstructured spatial effects are stored in file C:\temp\bayesx\output\c_district_spatialtotal.res f_district_random_variance Acceptance rate: 100 % Estimation results for the variance component: Mean: 0.00945755 Std. dev.: 0.00709751 2.5% Quantile: 0.000779 10% Quantile: 0.0018677 50% Quantile: 0.00791927 90% Quantile: 0.0190241 97.5% Quantile: 0.0288922 Results for the variance component are also stored in file C:\temp\bayesx\output\c_f_district_random_var.res Files of model summary: --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions is stored in file C:\temp\bayesx\output\c_graphics.prg NOTE: 'input filename' must be substituted by the filename of the boundary-file --------------------------------------------------------------------------- Batch file for visualizing effects of nonlinear functions in R is stored in file C:\temp\bayesx\output\c_r.R --------------------------------------------------------------------------- Latex file of model summaries is stored in file C:\temp\bayesx\output\c_model_summary.tex --------------------------------------------------------------------------- > c.drawmap 5